Browsing Interdisciplinary & Smart Design by Type "Article"

Now showing items 1-7 of 7

    • Assessing the effects of data selection and representation on the development of reliable E. coli sigma 70 promoter region predictors 

      Abbas, Mostafa M.; Mohie-Eldin, Mostafa M.; El-Manzalawy, Yasser ( Public Library of Science , 2015 , Article)
      As the number of sequenced bacterial genomes increases, the need for rapid and reliable tools for the annotation of functional elements (e.g., transcriptional regulatory elements) becomes more desirable. Promoters are the ...

    • FastRNABindR: Fast and Accurate Prediction of Protein-RNA Interface Residues 

      EL-Manzalawy, Yasser; Abbas, Mostafa; Malluhi, Qutaibah; Honavar, Vasant ( Public Library of Science (PLoS) , 2016 , Article)
      A wide range of biological processes, including regulation of gene expression, protein synthesis, and replication and assembly of many viruses are mediated by RNA-protein interactions. However, experimental determination ...

    • A Practical and Scalable Tool to Find Overlaps between Sequences 

      Rachid, Maan Haj; Malluhi, Qutaibah ( Hindawi , 2015 , Article)
      The evolution of the next generation sequencing technology increases the demand for efficient solutions, in terms of space and time, for several bioinformatics problems. This paper presents a practical and easy-to-implement ...

    • Skyline Discovery and Composition of Multi-Cloud Mashup Services 

      Zhang, Fan; Hwang, Kai; Khan, Samee U.; Malluhi, Qutaibah M. ( Institute of Electrical and Electronics Engineers , 2016 , Article)
      A cloud mashup is composed of multiple services with shared datasets and integrated functionalities. For example, the elastic compute cloud (EC2) provided by Amazon Web Service (AWS), the authentication and authorization ...

    • Towards robust autonomous driving systems through adversarial test set generation 

      Unal, Devrim; Catak, Ferhat Ozgur; Houkan, Mohammad Talal; Mudassir, Mohammed; Hammoudeh, Mohammad ( ISA - Instrumentation, Systems, and Automation Society , 2023 , Article)
      Correct environmental perception of objects on the road is vital for the safety of autonomous driving. Making appropriate decisions by the autonomous driving algorithm could be hindered by data perturbations and more ...

    • Using the Sadakane compressed suffix tree to solve the all-pairs suffix-prefix problem 

      Rachid, Maan Haj; Malluhi, Qutaibah; Abouelhoda, Mohamed ( Hindawi , 2014 , Article)
      The all-pairs suffix-prefix matching problem is a basic problem in string processing. It has an application in the de novo genome assembly task, which is one of the major bioinformatics problems. Due to the large size of ...

    • Virtual reality for ambulance simulation environment 

      Halabi, O.; Salahuddin, T.; Karkar, A.G.; Alinier, G. ( Springer , 2022 , Article)
      Simulations are beneficial in evaluating clinicians' empirical competencies through practical skills, prioritizing, and decision-making as part of patient care scenarios generally run in a full-scale physical context. ...